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A) Pairwise <t>average</t> <t>nucleotide</t> identity (ANI) and B) nucleotide diversity (π) of A. <t>rubrum</t> genomes within pre-exposed (red) and naïve (blue) communities after one week (Sample 3) and eight weeks (Sample 4) of severe acidification. Number of scaffolds are in parentheses. Asterisks indicate statistical significance based on Holm-Bonferroni adjusted P -values from Dunn’s test (*: P < 0.05, **: P < 0.01, ***: P < 0.001).
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A) Pairwise <t>average</t> <t>nucleotide</t> identity (ANI) and B) nucleotide diversity (π) of A. <t>rubrum</t> genomes within pre-exposed (red) and naïve (blue) communities after one week (Sample 3) and eight weeks (Sample 4) of severe acidification. Number of scaffolds are in parentheses. Asterisks indicate statistical significance based on Holm-Bonferroni adjusted P -values from Dunn’s test (*: P < 0.05, **: P < 0.01, ***: P < 0.001).
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A) Pairwise <t>average</t> <t>nucleotide</t> identity (ANI) and B) nucleotide diversity (π) of A. <t>rubrum</t> genomes within pre-exposed (red) and naïve (blue) communities after one week (Sample 3) and eight weeks (Sample 4) of severe acidification. Number of scaffolds are in parentheses. Asterisks indicate statistical significance based on Holm-Bonferroni adjusted P -values from Dunn’s test (*: P < 0.05, **: P < 0.01, ***: P < 0.001).
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Extremophilic iron-reducing strains and their relevant optimal (and range) growth conditions. Asterisks denote polyextremophilic strains (classified by more than one extremophilic adaptation according to definitions given in Figure 1a). ND = not determined. Taxonomy is based on the SILVA 16S rRNA reference database (release 138).
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A) Pairwise average nucleotide identity (ANI) and B) nucleotide diversity (π) of A. rubrum genomes within pre-exposed (red) and naïve (blue) communities after one week (Sample 3) and eight weeks (Sample 4) of severe acidification. Number of scaffolds are in parentheses. Asterisks indicate statistical significance based on Holm-Bonferroni adjusted P -values from Dunn’s test (*: P < 0.05, **: P < 0.01, ***: P < 0.001).

Journal: bioRxiv

Article Title: Pre-exposure to stress reduces loss of community and genetic diversity following severe environmental disturbance

doi: 10.1101/2024.10.11.617827

Figure Lengend Snippet: A) Pairwise average nucleotide identity (ANI) and B) nucleotide diversity (π) of A. rubrum genomes within pre-exposed (red) and naïve (blue) communities after one week (Sample 3) and eight weeks (Sample 4) of severe acidification. Number of scaffolds are in parentheses. Asterisks indicate statistical significance based on Holm-Bonferroni adjusted P -values from Dunn’s test (*: P < 0.05, **: P < 0.01, ***: P < 0.001).

Article Snippet: To characterize the impact of pre-exposure on the genetic diversity within A. rubrum , we mapped reads to the A. rubrum reference genome (NCBI RefSeq assembly GCF_900156265.1, strain ATCC 35905) to call single nucleotide polymorphisms (SNPs) for population genetic analyses.

Techniques:

Extremophilic iron-reducing strains and their relevant optimal (and range) growth conditions. Asterisks denote polyextremophilic strains (classified by more than one extremophilic adaptation according to definitions given in Figure 1a). ND = not determined. Taxonomy is based on the SILVA 16S rRNA reference database (release 138).

Journal: FEMS Microbiology Reviews

Article Title: Limitations of microbial iron reduction under extreme conditions

doi: 10.1093/femsre/fuac033

Figure Lengend Snippet: Extremophilic iron-reducing strains and their relevant optimal (and range) growth conditions. Asterisks denote polyextremophilic strains (classified by more than one extremophilic adaptation according to definitions given in Figure 1a). ND = not determined. Taxonomy is based on the SILVA 16S rRNA reference database (release 138).

Article Snippet: , Acidiphilium rubrum ATCC 35,905 , Bacteria | α- Proteobacteria | Acetobacteraceae , 3.0 (ND) , Okamura et al. , Wichlacz et al. ( ) .

Techniques: Bacteria